Adaptive diagnostic reasoning framework for pathology with multimodal large language models
Yunqi Hong, Kuei-Chun Kao, Liam Edwards, Nein-Tzu Liu, Chung-Yen Huang, Alex Oliveira-Kowaleski, Cho-Jui Hsieh* & Neil Y. C. Lin*
Communications Medicine, 6, 236 (2026) PDF
Uncertainty-Guided Selective Adaptation Enables Cross-Platform Predictive Fluorescence Microscopy
Kai-Wen K Yang, Andrew Bai, Alexandra Bermudez, Yunqi Hong, Zoe Latham, Iris Sloan, Michael Liu, Vishrut Goyal, Cho-Jui Hsieh*, Neil YC Lin*
Advanced Intelligent Discovery, (2026) PDF
Alexandra Bermudez, Zoe Latham, Alex Ma, Dapeng Bi, Jimmy Hu*, Neil Y.C. Lin*
Communications Biology, 8, 269 (2025) PDF
Nucleo-Cytoskeletal Coupling Controls Intracellular Deformation Partitioning during Cell Stretching
Jerry Chen, Iris Sloan, Alexandra Bermudez, David Choi, Ming-Heng Tsai, Lihua Jin, Jimmy Hu*, Neil Y.C. Lin*
Large-scale acoustic single cell trapping and selective releasing
Xiang Zhang, Jacob Smith, Amanda Chengyi Zhou, Jacqueline Thuy-Tram Duong, Tong Qi, Shilin Chen, Yen-Ju Lin, Alexi Gill, Chih-Hui Lo, Neil Y. C. Lin, Jing Wen, Yunfeng Lu, and Pei-Yu Chiou*
Lab on a Chip, 25, 1537-1551 (2025) PDF
What causes calcium oxalate kidney stones to form? An update on recent advances
Reyhaneh Nazarian, Neil Lin, Sapna Thaker, Rena Yang, Gerard CL Wong, Kymora B Scotland*
Uro, 5, 6 (2025) PDF
Regulation of Epithelial Cell Jamming Transition by Cytoskeleton and Cell-Cell Interactions
Zoe Latham, Alexandra Bermudez, Jimmy Hu*, Neil Y.C. Lin*
Biophysics Reviews, 5, 041301 (2024) PDF
An Open-Source Membrane Stretcher for Simultaneous Mechanical and Structural Characterizations of Soft Materials and Biological Tissues, Shannon Li, Alyssa Gee, Nathan Cai, Alexandra Bermudez, Neil Y.C. Lin*
HardwareX, 19, e00552 (2024) PDF
Prostate lineage-specific metabolism governs luminal differentiation and response to antiandrogen treatment, Giafaglione, J.M., Crowell, P.D., Delcourt, A.M.L., ... Payne M.C,, ... Lin N.Y.C, ... Goldstein A.S.
Nature Cell Biology, 1476-4679 (2023) PDF
Using Histologic Image Analysis to Understand Biophysical Regulations of Epithelial Cell Morphology
Alexandra Bermudez, Samanta Negrete Muñoz, Rita Blaik, Amy C. Rowat, Jimmy Hu*, Neil Y.C. Lin*
Biophysicist, 4, 2 (2023) PDF
Trustworthy in silico Cell Labeling via Ensemble-based Image Translation
Sara Imboden, Xuanqing Liu, Marie C. Payne, Cho-Jui Hsieh, and Neil Y. C. Lin*
Biophysical Reports, 4, 100133 (2023) PDF
Phenotyping Senescent Mesenchymal Stromal Cells using AI Image Translation
Leya Weber+, Brandon Lee+, Sara Imboden, Cho-Jui Hsieh, and Neil Y.C. Lin*
Current Research in Biotechnology, 5, 100120 (2023) PDF
Concept Gradients: Concept-Based Interpretation without Linear Assumption
Andrew Bai, Chih-Kuan Yeh, Neil Y. C. Lin, Pradeep Ravikumar, Cho-Jui Hsieh
International Conference on Learning Representation (ICLR) (2023) PDF
Marie C. Payne, SumYat Ho, Takao Hashimoto, Sara Imboden, Johnny A. Diaz, Brandon S. Lee, Melissa J. Rupert, Nathan Y. Cai, Andrew S. Goldstein, and Neil Y.C. Lin
Biotechnology Journal, 2200434 (2023) Featured on Journal Front Cover PDF
Rapid prototyping of functional acoustic devices using laser manufacturing
Xiang Zhang, Rosa Son, Yen-Ju Lin, Alexi Gill, Shilin Chen, Tong Qi, David Choi, Jing Wen, Yunfeng Lu, Neil YC Lin, and Pei-Yu Chiou
Lab on a Chip, 22, 4327 (2022) PDF
Supracellular Measurement of Spatially Varying Mechanical Heterogeneities in Live Monolayers
Alexandra Bermudez, Zachary Gonzalez, Bao Zhao, Ethan Salter, Xuanqing Liu, Leixin Ma, Mohammad Khalid Jawed, Cho-Jui Hsieh, and Neil Y.C. Lin
Biophysical Journal, 121(18), 3358-3369 (2022) PDF
Cell-cell Adhesion Impacts Epithelia Response to Substrate Stiffness: Morphology and Gene Expression,
David Choi, Zachary Gonzalez, Sum Yat Ho, Alexandra Bermudez, and Neil Y.C. Lin
Biophysical Journal, 121(2), 336-346 (2022) PDF
Investigating Heterogeneities of Live Mesenchymal Stromal Cells Using AI-Based Label-Free Imaging,
Sara Imboden, Xuanqing Liu, Brandon S. Lee, Marie C. Payne, Cho-Jui Hsieh, and Neil YC Lin.
Scientific Report 11, no. 1 (2021): 1-11. PDF
